By Kiyoko F. Aoki-Kinoshita
This booklet offers glycoscientists with a guide of important databases that may be utilized to glycoscience learn. even if many databases at the moment are publicly on hand, one of many hurdles for his or her clients is the training curve required to successfully make the most of these databases. accordingly, this publication not just describes the present databases, but in addition presents the right way to receive the objective information. that's, simply because many databases supply quite a few facts which may be received from diversified views, every one bankruptcy presents clients with strength organic questions that may be replied by means of a specific database and step by step directions, with figures, on the right way to receive that facts. Troubleshooting information also are supplied to assist clients encountering difficulties that may be envisioned while utilizing those databases. furthermore, touch info for every database is equipped in case unforeseen matters arise.
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Extra info for A Practical Guide to Using Glycomics Databases
F. Aoki-Kinoshita Banin E, Neuberger Y, Altshuler Y, : : : Dukler A (2002) A novel linear code nomenclature for complex carbohydrates. Trends Glycosci Glycotechnol 14: 127–137 Berger O, McBride R, Razi N, Paulson J (2008) Symbol notation extension for pathogen polysaccharides. The Scripps Research Institute, Consortium for Functional Glycomics Berman H, Henrick K, Nakamura H (2003) Announcing the worldwide protein data bank. Nat Struct Biol 10:980 Bijvoet JM, Peerdeman AF, van Bommel AJ (1951) Determination of the absolute configuration of optically active compounds by means of X-rays.
12 Related Data section containing motif, monosaccharide composition, and visualization tool Fig. 13 Visualization tool of structurally related glycan structure. The “Visualization Tool” displays the structurally related glycan structures registered in GlyTouCan. 2 Linked Databases The “Linked DB” section is located at the bottom of each entry page (Fig. 14). This section displays IDs and related information found in other glycan-related databases for the selected glycan structure. At the time of this writing, this section includes IDs from glycan-related databases such as BCSDB (Toukach et al.
Fig. 9 “Glycan List” view of glycan structure search result. The result of a substructure search by motif structure. 0: The First International Glycan Structure Repository 51 Fig. 10 Entry form for a search by accession number. This form located in the GlyTouCan menu bar Fig. , G00051MO) glycan image uses the CFG symbol (Varki et al. 2015). This notation can be changed using the “Preferences” menu. In the Related Data Section (Fig. 12), structural information such as “Motif” and “Monosaccharide Composition” are displayed.